0 : Class 0 - Phytochrome and Response Regulator

0.0 : Group 0 - Phytochrome

0.0.0 : Family 0 - Phytochrome

Tree

((((50965.m00132#F14J9_27#At1g09570:1e-184At1g09570putative phytochrome A
67714.m00007#MIK22_15#AT5g35840:1e-184):1e-184AT5g35840phytochrome C (sp|P14714)
45631.m00046#MSF3.17#At2g18790:1e-184):1e-184At2g18790phytochrome B Identical to
68169.m00234#dl4165c#AT4g16250:1e-184):1e-184AT4g16250phytochrome D
67120.m00010#F15J5.100#AT4g18130:1e-184)AT4g18130phytochrome E

0.1 : Group 1 - Ethylene Receptor Histidine Kinase and Response Regulator

0.1.0 : Family 0 - Cytokinin Receptor

Tree

((50970.m00104#F17L21.11#At1g27320:1e-184At1g27320putative sensory transduction
67712.m00008#MXH1_16#AT5g35750:1e-184):1e-152AT5g35750histidine kinase-like protein
51100.m00024#T23K3.2#At2g01830:1e-152)At2g01830putative histidine kinase

0.1.1 : Family 1 - Ethylene Receptor

Tree

((51096.m00120#F19P19.25#At1g04310:1e-124At1g04310putative ethylene receptor
(60249.m00080#F7O18.5#AT3g04580:1e-184AT3g04580putative ethylene receptor
60489.m00031#K14B15_4#AT3g23150:1e-184):1e-124):6e-74AT3g23150ethylene receptor, putative
(60030.m00043#T27F4.9#At1g66340:1e-184At1g66340ethylene-response protein, ETR1
8265.m00041#T20B5.14#At2g40940:1e-184):6e-74)At2g40940ethylene response sensor (ERS)

0.1.2 : Family 2 - Cytokinin-induced Response Regulator 2, 3, 5, 6, 7

Tree

(((51200.m00103#T10O24.8#At1g10470:2e-80At1g10470putative response regulator 3
51305.m00132#F23H11.25#At1g59940:2e-80):3e-50At1g59940response regulator 3
(67260.m00022#T17F15.30#AT3g48100:9e-76AT3g48100response reactor 2 (ATRR2)
67908.m00022#MQB2_220#AT5g62920:9e-76):3e-50):8e-43AT5g62920response regulator 6 (ARR6)
(51596.m00124#F25A4.14#At1g74890:2e-54At1g74890response regulator 7, putative
60119.m00057#F14D16.20#At1g19050:2e-54):8e-43)At1g19050response regulator 5, putative

0.1.3 : Family 3 - Transcription Response Regulator

Tree

((51536.m00067#F12A21_15#At1g67710:1e-57At1g67710response regulator, putative
48845.m00065#T8O11.7#At2g01760:1e-57):3e-46At2g01760putative two-component response
((50995.m00043#F13D4.140#At2g25180:1e-161At2g25180putative two-component
67188.m00001#F10N7.90#AT4g31920:1e-161):1e-62AT4g31920predicted protein RegA gene,
67881.m00006#k21l19_60#AT5g58080:1e-62):3e-46)AT5g58080ARR2 - like protein ARR2

1 : Class 1 - Diverse Response Regulator

1.0 : Group 0 - Unknown

1.0.0 : Family 0 - Unknown

Tree

52155.m00124#F27J15.10#At1g49190At1g49190hypothetical protein

1.0.1 : Family 1 - Unknown

Tree

60003.m00040#T22E19.16#At1g68210At1g68210hypothetical protein

1.0.2 : Family 2 - tRNA synthase with fused RR domain (real or artifact?)

Tree

170.m00058#T1B8.14#At2g33840At2g33840putative tyrosyl-tRNA synthetase

1.0.3 : Family 3 - Unknown

Tree

(36000.m00045#F19D11.7#At2g46790:6e-54At2g46790hypothetical protein
67669.m00004#T31K7_5#AT5g24470:6e-54)AT5g24470putative protein contains

1.1 : Group 1 - 2 component and Response Regulatory Proteins

1.1.0 : Family 0 -

Tree

(41871.m00042#F13H10.14#At2g41310:8e-77At2g41310putative two-component
67300.m00012#F24I3.120#AT3g57040:8e-77)AT3g57040responce reactor 4

1.1.1 : Family 1 -

Tree

(42106.m00042#T20P8.12#At2g27070:1e-184At2g27070putative two-component response
67599.m00015#T28J14_150#AT5g07210:1e-184)AT5g07210putative protein ARR2

1.1.2 : Family 2 -

Tree

(44468.m00044#T7D17.15#At2g40670:3e-43At2g40670putative two-component response
67299.m00003#T5P19_30#AT3g56380:3e-43)AT3g56380response regulator-like protein

1.1.3 : Family 3 -

Tree

48851.m00050#T13E11.21#At2g07440At2g07440putative two-component

1.1.4 : Family 4 -

Tree

7001.m00066#T30B22.27#At2g47430At2g47430putative histidine kinase

1.2 : Group 2 - Response Regulator

1.2.0 : Family 0 -

Tree

60249.m00070#F7O18.23#AT3g04740AT3g04740hypothetical protein

1.2.1 : Family 1 -

Tree

60279.m00055#T6K12.10#AT3g04280AT3g04280putative response regulator

1.2.2 : Family 2 -

Tree

60279.m00056#T6K12.11#AT3g04270AT3g04270hypothetical protein

1.2.3 : Family 3 -

Tree

60515.m00024#K20I9_8#AT3g16855AT3g168555ARR1 protein, putative

1.2.4 : Family 4 -

Tree

60515.m00053#K20I9_8#AT3g16855AT3g16855ARR1 protein, putative

1.2.5 : Family 5 -

Tree

(60616.m00009#MUH15_1#AT3g16857:1e-124AT3g16857ARR1 protein, putative
68169.m00220#dl4095w#AT4g16110:1e-124)AT4g16110hypothetical protein

1.3 : Group 3 - Pseudo Response Regulator?

1.3.0 : Family 0 -

Tree

67323.m00009#F26K9_100#AT3g62670AT3g62670putative protein ARR2

1.4 : Group 4 - Outliers, Probably none are HK or RR

1.4.0 : Family 0 -

Tree

67037.m00001#A_TM018A10_20#AT4g00760AT4g00760putative protein

2 : Class 2 -

2.0 : Group 0 -

2.0.0 : Family 0 -

Tree

67119.m00020#T6K21_200#AT4g18020AT4g18020putative protein predicted

2.1 : Group 1 -

2.1.0 : Family 0 -

Tree

(67577.m00012#F9G14_120#AT5g02810:2e-53AT5g02810putative protein
67891.m00007#MGO3.8#AT5g60100:2e-53)AT5g60100pseudo-response regulator - like

3 : Class 3 -

3.0 : Group 0 -

3.0.0 : Family 0 -

Tree

67741.m00006#K15E6.9#AT5g38880AT5g38880putative protein

3.0.1 : Family 1 -

Tree

67816.m00010#K21P3_12#AT5g49240AT5g49240putative protein contains

3.0.2 : Family 2 -

Tree

67899.m00015#mfb13_150#AT5g61380AT5g61380pseudo-response regulator 1

3.0.3 : Family 3 -

Tree

67904.m00014#MTG10.15#AT5g62120AT5g62120putative protein ARR1,

3.0.4 : Family 4 -

Tree

68087.m00008#MAJ23_80#AT5g10720AT5g10720histidine kinase - like protein